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dc.contributor.authorLozano-Solano, Dayan
dc.contributor.otherReales-González, Jhonnatan
dc.contributor.otherCatoe, Heath W.
dc.contributor.otherRaya, Raul R.
dc.contributor.otherAcosta-Hoyosa, Antonio J.
dc.date.accessioned2022-11-15T21:19:30Z
dc.date.available2022-11-15T21:19:30Z
dc.date.issued2020-04-09
dc.date.submitted2020-02-14
dc.identifier.urihttps://hdl.handle.net/20.500.12834/975
dc.description.abstractHere, we report the genome sequence of a Siphoviridae phage named vB_SauS_BaqSau1 (BaqSau1), infecting Staphylococcus aureus. Phage BaqSau1 was isolated from a sewage water treatment plant in Sahagún, Córdoba, Colombia. It has a double-stranded DNA (dsDNA) genome of 44,384 bp with 67 predicted genes, including a lysin containing a CHAP (cysteine, histidine-dependent amidohydrolase/ peptidase) domain.spa
dc.format.mimetypeapplication/pdfspa
dc.language.isoengspa
dc.rights.urihttp://creativecommons.org/licenses/by-nc/4.0/*
dc.sourceAmerican Society for Microbiologyspa
dc.titleGenome Sequence of the Siphoviridae Staphylococcus aureus Phage vB_SauS_BaqSau1spa
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dcterms.bibliographicCitation2. Nair D, Memmi G, Hernandez D, Bard J, Beaume M, Gill S, Francois P, Cheung AL. 2011. Whole-genome sequencing of Staphylococcus aureus strain RN4220, a key laboratory strain used in virulence research, identifies mutations that affect not only virulence factors but also the fitness of the strain. J Bacteriol 193:2332–2335. https://doi.org/10.1128/JB .00027-11.spa
dcterms.bibliographicCitation3. Van Twest R, Kropinski AM. 2009. Bacteriophage enrichment from water and soil. Methods Mol Biol 501:15–21. https://doi.org/10.1007/978-1 -60327-164-6_2.spa
dcterms.bibliographicCitation4. Kropinski AM, Mazzocco A, Waddell TE, Lingohr E, Johnson RP. 2009. Enumeration of bacteriophages by double agar overlay plaque assay. Methods Mol Biol 501:69 –76. https://doi.org/10.1007/978-1-60327-164 -6_7.spa
dcterms.bibliographicCitation5. Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30:2114 –2120. https://doi.org/10 .1093/bioinformatics/btu170.spa
dcterms.bibliographicCitation6. Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, Alekseyev MA, Pevzner PA. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 19:455– 477. https://doi.org/10.1089/cmb.2012.0021.spa
dcterms.bibliographicCitation7. Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O. 2008. The RAST server: Rapid Annotations using Subsystems Technology. BMC Genomics 9:75. https://doi.org/10.1186/1471-2164-9-75.spa
dcterms.bibliographicCitation8. Zimmermann L, Stephens A, Nam S-Z, Rau D, Kubler J, Lozajic M, Gabler F, Soding J, Lupas AN, Alva V. 2018. A completely reimplemented MPI bioinformatics toolkit with a new HHpred server at its core. J Mol Biol 430:2237–2243. https://doi.org/10.1016/j.jmb.2017.12.007.spa
dcterms.bibliographicCitation9. Richter M, Rosselló-Móra R. 2009. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci U S A 106: 19126–19131. https://doi.org/10.1073/pnas.0906412106.spa
dcterms.bibliographicCitation10. Figueras MJ, Beaz-Hidalgo R, Hossain MJ, Liles MR. 2014. Taxonomic affiliation of new genomes should be verified using average nucleotide identity and multilocus phylogenetic analysis. Genome Announc 2:e00927-14. https://doi.org/10.1128/genomeA.00927-14.spa
dcterms.bibliographicCitation11. Arahal DR. 2014. Whole-genome analyses: average nucleotide identity, p 103–122. In Goodfellow M, Sutcliffe I, Chun J (ed), New approaches to prokaryotic systematics. Academic Press, Cambridge, MA.spa
dcterms.bibliographicCitation12. Lozano D, Díaz L, Echeverry M, Pineda S, Máttar S. 2010. PVL positive methicillin-resistant Staphylococcus aureus (MRSAs) strains isolated from healthy individuals in Montería, Córdoba. Univ Sci (Bogota) 15: 159–165. (In Spanish.) https://doi.org/10.11144/javeriana.SC15-2.ppmr.spa
dcterms.bibliographicCitation13. Alite C, Humphrey S, Donderis J, Maiques E, Ciges-Tomas JR, Penadés JR, Marina A. 2017. Dissecting the link between the enzymatic activity and the SaPI inducing capacity of the phage 80 dUTPase. Sci Rep 7:11234. https://doi.org/10.1038/s41598-017-11234-9.spa
dcterms.bibliographicCitation14. Bateman A, Rawlings ND. 2003. The CHAP domain: a large family of amidases including GSP amidase and peptidoglycan hydrolases. Trends Biochem Sci 28:234 –237. https://doi.org/10.1016/S0968-0004(03) 00061-6.spa
dcterms.bibliographicCitation15. Becker SC, Foster-Frey J, Donovan DM. 2008. The phage K lytic enzyme LysK and lysostaphin act synergistically to kill MRSA. FEMS Microbiol Lett 287:185–191. https://doi.org/10.1111/j.1574-6968.2008.01308.x.spa
datacite.rightshttp://purl.org/coar/access_right/c_abf2spa
oaire.resourcetypehttp://purl.org/coar/resource_type/c_6501spa
oaire.versionhttp://purl.org/coar/version/c_970fb48d4fbd8a85spa
dc.audiencePúblico generalspa
dc.identifier.doi10.1128/MRA.00147-20.
dc.identifier.instnameUniversidad del Atlánticospa
dc.identifier.reponameRepositorio Universidad del Atlánticospa
dc.rights.ccAttribution-NonCommercial 4.0 International*
dc.subject.keywordsdouble stranded, DNAgenomic, DNAvirus DNA, rticlebacterial strainColombiaDNA sequenceDNA sequencingnonhumannucleotide sequencesewage treatmentSiphoviridaeStaphylococcus aureusStaphylococcus phagevirus genevirus genomevirus strainwhole genome sequencingspa
dc.type.driverinfo:eu-repo/semantics/articlespa
dc.type.hasVersioninfo:eu-repo/semantics/publishedVersionspa
dc.type.spaArtículospa
dc.publisher.placeBarranquillaspa
dc.rights.accessRightsinfo:eu-repo/semantics/openAccessspa
dc.publisher.disciplineBiologíaspa
dc.publisher.sedeSede Nortespa


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